Package index • fsusieR

All functions

EBmvFR(): Empirical Bayes multivariate functional regression
EBmvFR.workhorse(): Empirical Bayes multivariate functional regression
HFT(): Perform Haar-Fisz tranform on count matrix
HMM_regression(): Compute refined estimate using HMM regression
TI_regression(): Compute refined estimate using translation invariant wavelet transform
affected_reg(): Extract coordinates of the regions affected by the different CS
bin_Y(): Binned reponsed data
change_fit(): Change postprocessing used in susiF object
colScale(): Scaling function from r-blogger
ebpm_normal(): Solve Gaussian approximation to Poisson mean problem
ebps(): empirical Bayes Poisson smoothing
ebps_general_control_default(): Default parameters for ebps
ebps_init_control_default(): Default parameters for ebps initialization
ebps_smooth_control_default(): Default parameters for ebps smoothing function
fsusie_log_plot(): fSuSiE Plots using Gviz
plot_susiF() plot(<susiF>) plot_susiF_pip() plot_susiF_effect(): fSuSiE Plots
get_fitted_effect(): Access fitted effect l
init_EBmvFR_obj(): Create an EBmvFR object
init_susiF_obj(): Initialize a susiF object using regression coefficients
pois_mean_GP(): Solve Gaussian approximation to Poisson mean problem
pois_mean_GP_opt_obj(): calculate objective function
pois_mean_GP_opt_obj_gradient(): calculate gradient vector
pois_smooth_split(): Smooth over-dispersed Poisson sequence
remap_data(): Ramp matrix of unevenly space data (or non power of two)
simu_IBSS_ash_vanilla(): Simulate data under a simple mixture normal prior
simu_IBSS_per_level(): Simulate data under the mixture normal prior
smash_dwt(): Empirical Bayes wavelet smoothing via DWT
smash_regression(): Compute refined estimate using translation invariant wavelet transform
susiF(): Sum of Single Function
susiF.workhorse(): Sum of Single Function
univariate_functional_regression(): Wrapper for univariate functional regression used on susiF
vga_pois_solver(): Optimize vga poisson problem
vga_pois_solver_newton_1iter(): Optimize vga poisson problem 1 iteration.