Real-data SuSiE-RSS example with R-reference mismatch.

Summary statistics from one real-data gene region, together with a reference correlation matrix computed from a real-world 1000 Genomes European reference panel with roughly 500 samples. The data object is name-free and contains a 500-variant subset used to illustrate the `R_finite` and `R_mismatch` options in `susie_rss`.

Format

rss_mismatch_example is a list with the following elements:

z

z-scores.

bhat

Estimated marginal regression coefficients.

shat

Standard errors of bhat.

n

Reference sample-size estimate used by susie_rss.

R

Reference correlation matrix.

See also

The “Diagnosing and modeling R-reference mismatch in SuSiE-RSS” vignette.

Examples

data(rss_mismatch_example)