Data simulated using real genotypes from 50,000 individuals and 200 SNPs. Two of the SNPs have non-zero effects on the multivariate response. The response data are generated under a linear regression model. The simulated response and the columns of the genotype matrix are centered.
FinemappingConvergence is a list with the following
elements:
Summary statistics computed using the centered and scaled genotype matrix.
Summary statistics computed using the centered and scaled genotype data, and the centered simulated response.
yty is computed using the centered simulated response.
The sample size (50,000).
The coefficients used to simulate the responses.
z-scores from a simple (single-SNP) linear regression.
A similar data set with more SNPs is used in the “Refine SuSiE model” vignette.
data(FinemappingConvergence)