Last updated: 2017-08-24

Code version: 6089d1d

P = 300

#dsc-query omega -o gtexlung300loglik.ipynb --title "compare methods in lung data loglik" --target normalize_data.P normalize_data.n loglik.score flash SFAmix tiger glasso clime hybrid_SFAmix hybrid_flash --condition "normalize_data.P = 300" "normalize_data.n = 200" --language R
source("../testdata/plotfunction.R")
data = readRDS("../testdata/omega0815/gtexlung300loglik.rds")
methods = c("flash", "SFAmix", "tiger", "glasso", "clime", "hybrid_SFAmix", "hybrid_flash")
score = "loglik_score"
title = "loglik P=300"
p11 = box_per_data(data, methods, score,title)
#dsc-query omega -o gtexlung300mse.ipynb --title "compare methods in lung data mse" --target normalize_data.P normalize_data.n mse.score flash SFAmix tiger glasso clime hybrid_SFAmix hybrid_flash --condition "normalize_data.P = 300" "normalize_data.n = 200" --language R
source("../testdata/plotfunction.R")
data = readRDS("../testdata/omega0815/gtexlung300mse.rds")
methods = c("flash", "SFAmix", "tiger", "glasso", "clime", "hybrid_SFAmix", "hybrid_flash")
score = "mse_score"
title = "MSE P=300"
p12 = box_per_data(data, methods, score,title)
#dsc-query omega -o gtexlung300hyvarinen.ipynb --title "compare methods in lung data hyvarinen" --target normalize_data.P normalize_data.n hyvarinen.score flash SFAmix tiger glasso clime hybrid_SFAmix hybrid_flash --condition "normalize_data.P = 300" "normalize_data.n = 200" --language R
source("../testdata/plotfunction.R")
data = readRDS("../testdata/omega0815/gtexlung300hyvarinen.rds")
methods = c("flash", "SFAmix", "tiger", "glasso", "clime", "hybrid_SFAmix", "hybrid_flash")
score = "hyvarinen_score"
title = "hyvarinen P=300"
p13 = box_per_data(data, methods, score,title)
library(cowplot)
plot_grid(p11,p12,p13,ncol = 2)

P = 1000

#dsc-query omega -o gtexlung1000loglik.ipynb --title "compare methods in lung data loglik" --target normalize_data.P normalize_data.n loglik.score flash SFAmix tiger glasso clime hybrid_SFAmix hybrid_flash --condition "normalize_data.P = 1000" "normalize_data.n = 200" --language R
source("../testdata/plotfunction.R")
data = readRDS("../testdata/omega0815/gtexlung1000loglik.rds")
methods = c("flash", "SFAmix", "tiger", "glasso", "clime", "hybrid_SFAmix", "hybrid_flash")
score = "loglik_score"
title = "loglik P=1000"
p21 = box_per_data(data, methods, score,title)
#dsc-query omega -o gtexlung1000mse.ipynb --title "compare methods in lung data mse" --target normalize_data.P normalize_data.n mse.score flash SFAmix tiger glasso clime hybrid_SFAmix hybrid_flash --condition "normalize_data.P = 1000" "normalize_data.n = 200" --language R
source("../testdata/plotfunction.R")
data = readRDS("../testdata/omega0815/gtexlung1000mse.rds")
methods = c("flash", "SFAmix", "tiger", "glasso", "clime", "hybrid_SFAmix", "hybrid_flash")
score = "mse_score"
title = "MSE P=1000"
p22 = box_per_data(data, methods, score,title)
#dsc-query omega -o gtexlung1000hyvarinen.ipynb --title "compare methods in lung data hyvarinen" --target normalize_data.P normalize_data.n hyvarinen.score flash SFAmix tiger glasso clime hybrid_SFAmix hybrid_flash --condition "normalize_data.P = 1000" "normalize_data.n = 200" --language R
source("../testdata/plotfunction.R")
data = readRDS("../testdata/omega0815/gtexlung1000hyvarinen.rds")
methods = c("flash", "SFAmix", "tiger", "glasso", "clime", "hybrid_SFAmix", "hybrid_flash")
score = "hyvarinen_score"
title = "hyvarinen P=1000"
p23 = box_per_data(data, methods, score,title)
library(cowplot)
plot_grid(p21,p22,p23,ncol = 2)

P = 100

#dsc-query omega -o gtexlung100loglik.ipynb --title "compare methods in lung data loglik" --target normalize_data.P normalize_data.n loglik.score flash SFAmix tiger glasso clime hybrid_SFAmix hybrid_flash --condition "normalize_data.P = 100" "normalize_data.n = 200" --language R
source("../testdata/plotfunction.R")
data = readRDS("../testdata/omega0815/gtexlung100loglik.rds")
methods = c("flash", "SFAmix", "tiger", "glasso", "clime", "hybrid_SFAmix", "hybrid_flash")
score = "loglik_score"
title = "loglik P=100"
p31 = box_per_data(data, methods, score,title)
#dsc-query omega -o gtexlung100mse.ipynb --title "compare methods in lung data mse" --target normalize_data.P normalize_data.n mse.score flash SFAmix tiger glasso clime hybrid_SFAmix hybrid_flash --condition "normalize_data.P = 100" "normalize_data.n = 200" --language R
source("../testdata/plotfunction.R")
data = readRDS("../testdata/omega0815/gtexlung100mse.rds")
methods = c("flash", "SFAmix", "tiger", "glasso", "clime", "hybrid_SFAmix", "hybrid_flash")
score = "mse_score"
title = "MSE P=100"
p32 = box_per_data(data, methods, score,title)
#dsc-query omega -o gtexlung100hyvarinen.ipynb --title "compare methods in lung data hyvarinen" --target normalize_data.P normalize_data.n hyvarinen.score flash SFAmix tiger glasso clime hybrid_SFAmix hybrid_flash --condition "normalize_data.P = 100" "normalize_data.n = 200" --language R
source("../testdata/plotfunction.R")
data = readRDS("../testdata/omega0815/gtexlung100hyvarinen.rds")
methods = c("flash", "SFAmix", "tiger", "glasso", "clime", "hybrid_SFAmix", "hybrid_flash")
score = "hyvarinen_score"
title = "hyvarinen P=100"
p33 = box_per_data(data, methods, score,title)
library(cowplot)
plot_grid(p31,p32,p33,ncol = 2)

P = 10

#dsc-query omega -o gtexlung10loglik.ipynb --title "compare methods in lung data loglik" --target normalize_data.P normalize_data.n loglik.score flash SFAmix tiger glasso clime hybrid_SFAmix hybrid_flash inv_cov --condition "normalize_data.P = 10" "normalize_data.n = 200" --language R
source("../testdata/plotfunction.R")
data = readRDS("../testdata/omega0815/gtexlung10loglik.rds")
methods = c("flash", "SFAmix", "tiger", "glasso", "clime", "hybrid_SFAmix", "hybrid_flash","inv_cov")
score = "loglik_score"
title = "loglik P=10"
p41 = box_per_data(data, methods, score,title)
#dsc-query omega -o gtexlung10mse.ipynb --title "compare methods in lung data mse" --target normalize_data.P normalize_data.n mse.score flash SFAmix tiger glasso clime hybrid_SFAmix hybrid_flash inv_cov --condition "normalize_data.P = 10" "normalize_data.n = 200" --language R
source("../testdata/plotfunction.R")
data = readRDS("../testdata/omega0815/gtexlung10mse.rds")
methods = c("flash", "SFAmix", "tiger", "glasso", "clime", "hybrid_SFAmix", "hybrid_flash","inv_cov")
score = "mse_score"
title = "MSE P=10"
p42 = box_per_data(data, methods, score,title)
#dsc-query omega -o gtexlung10hyvarinen.ipynb --title "compare methods in lung data hyvarinen" --target normalize_data.P normalize_data.n hyvarinen.score flash SFAmix tiger glasso clime hybrid_SFAmix hybrid_flash inv_cov --condition "normalize_data.P = 10" "normalize_data.n = 200" --language R
source("../testdata/plotfunction.R")
data = readRDS("../testdata/omega0815/gtexlung10hyvarinen.rds")
methods = c("flash", "SFAmix", "tiger", "glasso", "clime", "hybrid_SFAmix", "hybrid_flash","inv_cov")
score = "hyvarinen_score"
title = "hyvarinen P=10"
p43 = box_per_data(data, methods, score,title)
library(cowplot)
plot_grid(p41,p42,p43,ncol = 2)

Session information

sessionInfo()
R version 3.3.0 (2016-05-03)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.12.6 (unknown)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] cowplot_0.8.0   ggplot2_2.2.1   workflowr_0.4.0 rmarkdown_1.6  

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.12     digest_0.6.12    rprojroot_1.2    plyr_1.8.4      
 [5] grid_3.3.0       gtable_0.2.0     backports_1.1.0  git2r_0.19.0    
 [9] magrittr_1.5     scales_0.4.1     evaluate_0.10.1  rlang_0.1.2     
[13] stringi_1.1.5    lazyeval_0.2.0   labeling_0.3     tools_3.3.0     
[17] stringr_1.2.0    munsell_0.4.3    yaml_2.1.14      colorspace_1.3-2
[21] htmltools_0.3.6  knitr_1.17       tibble_1.3.3

This R Markdown site was created with workflowr